Author

Jennifer O. Black

Children's Hospital ColoradoORCID 0000-0002-2181-9344Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Approach:large language model· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Alexis B. DuffyiD· 1 shared Alyaa Al‐IbraheemiiD· 1 shared Amy Treece· 1 shared Andrew E. GoodspeediD· 1 shared Avery BodlakiD· 1 shared Ayesha BatooliD· 1 shared Bo YaoiD· 1 shared Brian S. GreffeiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperCancer Biology

Alexis B. DuffyORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 19, 2026

Leveraging Large Language Models to Extract Prognostic Pathology Features in Ewing Sarcoma

Jingwei Huang, Ayesha Batool, Zifan Gu…·Patrick J. Leavey

This paper uses large language models to extract prognostic histologic features from Ewing sarcoma pathology reports, identifying NSE and S100 as significant biomarkers.

DOI 10.64898/2026.02.20.707103

humanbulk RNA-seq

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Cancer BiologyClinical Cancer ResearchPeer-reviewedMar 3, 2025

Characterization of transcriptional heterogeneity and novel therapeutic targets using single cell RNA-sequencing of primary and circulating Ewing sarcoma cells.

Andrew E. Goodspeed, Avery Bodlak, Alexis B. Duffy…·Masanori Hayashi

This study uses single-cell RNA-sequencing to analyze transcriptional heterogeneity in Ewing sarcoma and identifies TSPAN8 as a novel therapeutic target.

21 citationstop 2%

humanscRNA-seq

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