Author

Andrei Tokmakoff

University of ChicagoORCID 0000-0002-2434-8744Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:DNA methylation· 2 Research Focus:chromatin & epigenetic regulation· 1 Approach:experimental assay· 1 Approach:mechanistic / dynamical model· 1

Frequent Co-Authors

Andrew L. FergusoniD· 2 shared Brennan AshwoodiD· 2 shared Joseph R. SachlebeniD· 2 shared Michael S. JonesiD· 2 shared Yumin LeeiD· 2 shared Aleksandar RadakoviciD· 1 shared Jack W. SzostakiD· 1 shared Smayan Khanna· 1 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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2 shared papersBiophysics

Andrew L. FergusonORCID

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2 papers

Recent·Most cited

BiophysicsBiophysical JournalPeer-reviewedNov 24, 2023

Molecular insight into how the position of an abasic site and its sequence environment influence DNA duplex stability and dynamics

Brennan Ashwood, Michael S. Jones, Yumin Lee…·Andrei Tokmakoff

The paper examines how the position and sequence environment of an abasic site affect DNA duplex stability and dynamics using spectroscopy and simulations.

11 citations

DNA methylationmechanistic / dynamical model

𝕏 PostBluesky

BiophysicsBiophysical JournalPeer-reviewedJul 19, 2023

Direct monitoring of the thermodynamics and kinetics of DNA and RNA dinucleotide dehybridization from gaps and overhangs

Brennan Ashwood, Michael S. Jones, Aleksandar Radakovic…·Andrei Tokmakoff

This study measures the thermodynamics and kinetics of DNA and RNA dinucleotide dehybridization using infrared spectroscopy and simulations, revealing stabilization through stacking interactions and structural dynamics.

22 citations

DNA methylationexperimental assay

𝕏 PostBluesky