Author

Karin Yanagi

Tufts UniversityORCID 0000-0002-2630-880XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Assay:metabolomics· 1 Assay:protein sequence· 1

Frequent Co-Authors

Kyongbum LeeiD· 2 shared Allison J. Tierney· 1 shared Charles R. MaceiD· 1 shared Clay S. BennettiD· 1 shared David Lee KaplaniD· 1 shared Jessica A. LeeiD· 1 shared Jugal Kishore SahooiD· 1 shared Kathleen G. Maiello· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Kyongbum LeeORCID

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2 papers

Recent·Most cited

BioinformaticsPLoS Computational BiologyPeer-reviewedSep 25, 2026

Fast structural search for classification of gut bacterial mucin O-glycan degrading enzymes

Mert Erden, Tyler J. Schult, Karin Yanagi…·Kyongbum Lee

This paper introduces DEFT, a method that combines sequence- and structure-based approaches to improve EC number prediction accuracy and enable high-throughput enzyme repertoire annotation.

DOI 10.1371/journal.pcbi.1014034

protein sequencedeep learning

𝕏 PostBluesky

BioengineeringBiotechnology and BioengineeringPeer-reviewedApr 30, 2024

Rapid spectrophotometric detection for optimized production of landomycins and characterization of their therapeutic potential

Todd C. Chappell, Kathleen G. Maiello, Allison J. Tierney…·Nikhil U. Nair

This study improves landomycin production in Streptomyces cyanogenus using spectrophotometric methods and characterizes their antimicrobial and anticancer activities.

DOI 10.1002/bit.28725

bacteria (other)metabolomics

𝕏 PostBluesky