Fadi G. Alnaji

This study analyzes influenza A virus deletion-containing genomes over time, finding that specific mutations enhance their replication and interference while being lethal in wild-type backgrounds.

This study shows that serial passaging of JEV in pigs leads to fitness adaptations and amino acid changes, but not increased direct transmission.

The paper identifies cryptic proteins from deletion-containing viral genomes that inhibit influenza virus replication and expand its proteome.

The paper develops an Illumina-based sequencing framework and pipeline to accurately detect and map influenza virus DIP-associated RNAs, demonstrating its reliability through simulated and experimental data.