Nicolas Delhomme

This paper presents a transcriptome atlas comparing zygotic and somatic embryogenesis in Norway spruce to identify gene regulatory differences and improve plant production.

The paper presents an improved chromosome-scale genome assembly for Populus tremula and integrates population genetics and genomics data to study leaf physiognomy traits through GWAS and functional analysis.

This study identifies tissue-specific gene co-expression networks and core genes in Parascaris univalens following ivermectin exposure, revealing differential transcriptional responses and potential resistance mechanisms.

Seidr is a toolkit for gene regulatory and co-expression network inference that reduces algorithmic bias and improves robustness across species and conditions.

The paper shows that Saccharomycodes ludwigii undergoes meiosis without recombination, relying on frequent fertilization within tetrads instead.

ProkSeq is an RNA-seq analysis pipeline for prokaryotes that automates quality control, differential expression, normalization, and visualization.

The paper assembles the Norway spruce mitogenome using machine learning and long reads, revealing heterogeneous recombination dynamics and active small repeats in plant mitogenomes.

The paper profiles transcriptome and translatome during seed maturation, identifies translational regulatory patterns, and constructs a network to uncover gene regulation and function.