Author
Audrey Qiuyan Fu
University of IdahoORCID 0000-0002-3479-5652Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2017-2025 · peak 2/yrCo-Author Collaboration Network
10 top collaborators · 17 mutual co-author links6 papers
Recent·Most cited
- GenomicsbioRxivPreprint
Types of cis- and trans-gene regulation of expression quantitative trait loci across human tissues
Jarred Kvamme, Md. Bahadur Badsha, Evan A. Martin…·Audrey Qiuyan Fu
The paper investigates cis- and trans-regulation of eQTLs across human tissues, identifying different regulatory network types and mediator roles.
DOI 10.1101/2022.01.24.477617 - BioinformaticsComputers in Biology and MedicinePeer-reviewed
Systematic identification of A-to-I editing associated regulators from multiple human cancers
Tongjun Gu, Audrey Qiuyan Fu, Michael J. Bolt, Xiwu Zhao
The paper identifies genes associated with A-to-I RNA editing in four cancers using a logistic regression model and highlights cancer-specific and shared regulatory patterns.
2 citations - BioinformaticsQuantitative BiologyPeer-reviewed
Imputation of single-cell gene expression with an autoencoder neural network
Md. Bahadur Badsha, Rui Li, Boxiang Liu…·Audrey Qiuyan Fu
The paper introduces LATE and TRANSLATE autoencoder-based methods for imputing single-cell RNA-seq data, showing improved performance over existing methods.
56 citations - BioinformaticsFrontiers in GeneticsPeer-reviewed
Learning causal biological networks with the principle of Mendelian randomization
Md. Bahadur Badsha, Audrey Qiuyan Fu
This paper introduces MRPC, a machine learning algorithm that uses Mendelian randomization to infer causal biological networks from genotype and molecular phenotype data.
65 citations - GenomicsThe American Journal of Human GeneticsPeer-reviewed
Inferring Relevant Cell Types For Complex Traits Using Single-Cell Gene Expression
Diego Calderon, Anand Bhaskar, David A. Knowles…·Jonathan K. Pritchard
RolyPoly links GWAS summary statistics with single-cell RNA-seq to identify trait-relevant cell types and genes, finding associations between microglia and Alzheimer's disease, and oligodendrocytes and schizophrenia.