Taher Mun

The paper introduces an impute-first alignment framework that improves variant calling accuracy and efficiency by using a personalized diploid reference.

The paper introduces rowbowt, a tool for pangenomic genotyping using a marker array to improve accuracy and efficiency over existing methods.

LevioSAM lifts SAM/BAM alignments between references using VCF files, achieving faster performance with multi-threading.

The paper introduces a reference flow alignment method that reduces reference bias using multiple population reference genomes, achieving similar accuracy to graph aligners with lower memory usage and faster speed.

The paper introduces an efficient method for constructing a complete index for pan-genomics read alignment, improving memory and time efficiency over existing methods.

The paper introduces a preprocessing algorithm called prefix-free parsing to efficiently build compressed Burrows-Wheeler Transform indexes for large genomic datasets.