Author

Timothy D. Paape

Agricultural Research ServiceORCID 0000-0002-3595-2875Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Aditi Bhat· 2 shared José J. PueyoiD· 2 shared Michael R. Clear· 2 shared Reena Sharma· 2 shared Ankita MishraiD· 1 shared Brendan EpsteiniD· 1 shared Kumaran DesiganiD· 1 shared M. Mercedes LucasiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersPlant Biology

Aditi Bhat

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2 papers

Recent·Most cited

Plant BiologyPlant StressPeer-reviewedApr 11, 2025

Plant genotype and microbial strain combinations strongly influence the transcriptome under heavy metal stress conditions

Reena Sharma, Sanhita Chakraborty, Aditi Bhat…·Timothy D. Paape

The paper investigates how plant genotype and microbial strain combinations influence transcriptome responses to heavy metal stress, finding that Hg-tolerant rhizobia reduce stress effects in host plants.

9 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivPreprintDec 27, 2023

Local adaptation to mercury contamination by nitrogen-fixing rhizobia is driven by horizontal gene transfer, copy number, and enhanced gene expression

Aditi Bhat, Reena Sharma, M. Mercedes Lucas…·Timothy D. Paape

This study identifies that horizontal gene transfer, copy number, and enhanced expression of the Mer operon confer mercury tolerance in rhizobia, with implications for plant-metal interactions.

DOI 10.1101/2023.12.27.573466

long-read sequencingdeep learning

𝕏 PostBluesky