Author

Stephanie Ting

University of North Carolina at Chapel HillORCID 0000-0002-4060-0102Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:differential expression· 2 Research Focus:variant effect prediction· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Elizabeth BrunkiD· 2 shared Aarav MehtaiD· 1 shared Bartholomew Tam· 1 shared Christina Ford· 1 shared Danielle Cannon· 1 shared Hong YiiD· 1 shared Jacob Fessler· 1 shared Jiayan MaiD· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Elizabeth BrunkORCID

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3 papers

Recent·Most cited

BioinformaticsJournal of Chemical Information and ModelingPeer-reviewedApr 18, 2024

Machine learning of three-dimensional protein structures to predict the functional impacts of genome variation

Kriti Shukla, Kelvin Idanwekhai, Martin S. Naradikian…·Elizabeth Brunk

This paper develops a machine learning method using protein structures to predict the functional impacts of genetic variants on transcriptional pathways of Nrf2 and c-MYC.

4 citations

humanprotein structure

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GenomicsbioRxivPreprintDec 18, 2023

CytoCellDB: A Resource Database For Classification and Analysis of Extrachromosomal DNA in Cancer

Jacob Fessler, Stephanie Ting, Hong Yi…·Elizabeth Brunk

CytoCellDB is a database that expands the number of cancer cell lines with ecDNA annotations, enabling analysis of ecDNA in relation to molecular data and drug responses.

1 citation

humanproteomics

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BioinformaticsbioRxivPreprintNov 14, 2023

Deciphering the Functional Roles of Individual Cancer Alleles Across Comprehensive Cancer Genomic Studies

Jiayan Ma, Stephanie Ting, Bartholomew Tam…·William Kim

This paper introduces REVEALER 2.0, an improved algorithm for identifying genomic alterations associated with functional profiles, showing increased speed and resolution for analyzing cancer genomic data.

2 citations

humanwhole-exome sequencing

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