MicrobiologybioRxivPreprint
Non-coding RNAs drive transcriptional network rewiring underlying thermal dimorphism in a human pathogenic fungus
DOI 10.64898/2026.09.29.755541
Author
Xueyan Hu
Peking UniversityORCID 0000-0002-4253-3564Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
Click to filter author papersSignature Assays, Organisms & Methods
Click to filter · or open tagActivity by Year
2021-2026 · peak 3/yrCo-Author Collaboration Network
10 top collaborators · 32 mutual co-author linksFocal author (center)Selected co-authorORCID co-authorUnlinked name
Curved chords = mutual co-authorship7 papers
Recent·Most cited
- BioinformaticsbioRxivPreprint
MycoCirc: A Pan-Fungal Multi-Modal Pretrained Model for Fungal circRNA Prediction from Genome Sequence
Xueyan Hu, Yueqi Jin, Juan Wang, Ence Yang
The paper introduces mycoCirc, a pan-fungal model for circRNA prediction from genome sequences, achieving better performance than existing methods across multiple fungal groups.
DOI 10.64898/2026.06.29.735431 - BioinformaticsDatabasePeer-reviewed
TEITbase: a database for transposable element (TE)-initiated transcripts in human cancers
Yun Zhang, Jianqi She, Xueyan Hu…·Ence Yang
The paper develops TEITbase, a database of TE-initiated transcripts in 33 cancer types, identifying 38,995 transcripts and 6,203 tumor-specific ones, with tools for downstream analysis.
1 citation - MicrobiologymSystemsPeer-reviewed
Functional diversification of the MADS-box gene family in fine-tuning the dimorphic transition of Talaromyces marneffei
Xueyan Hu, Yun Zhang, Juan Wang…·Ence Yang
The paper identifies functional diversification of MADS-box genes in Talaromyces marneffei, showing mads9 inhibits hyphal-to-yeast transition while mads10 does not.
2 citations - BioinformaticsbioRxivPreprint
Transposable elements drive species-specific and tissue-specific transcriptomes in human development
Yun Zhang, Jianqi She, Xueyan Hu…·Ence Yang
The paper identifies TE-initiated transcripts across human tissues and embryonic stem cells, showing tissue-specific activation and primate-specific TSSs contributing to gene regulation.
DOI 10.1101/2025.05.19.654775 - MicrobiologyPLoS GeneticsPeer-reviewed
Species-specific circular RNA circDS-1 enhances adaptive evolution in Talaromyces marneffei through regulation of dimorphic transition and virulence
Xueyan Hu, Minghao Du, Changyu Tao…·Ence Yang
This study identifies circDS-1, a circular RNA in Talaromyces marneffei, that promotes dimorphic transition and virulence, revealing a novel mechanism for fungal thermal adaptation.
- Molecular BiologyeLifePeer-reviewed
circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencing
Zelin Liu, Changyu Tao, Shiwei Li…·Ence Yang
The paper introduces circFL-seq, a method for full-length circRNA sequencing using RCRT and nanopore sequencing, identifying 77,606 high-quality circRNAs from human cell lines and tissues.
59 citations