Author
University of North FloridaORCID 0000-0002-4536-6917Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Madelyn Warr, Trung Dinh, Bella Root…·Brendan Mumey
The paper predicts accessible chromatin regions in plant genomes using motif chaining and machine learning models.
Sandali D. Lokuge, Shyaman Jayasundara, Puwasuru Ihalagedara…·Damayanthi Herath
The paper introduces miRNAFinder, a web tool for plant pre-miRNA classification using a multilayer perceptron model with high accuracy.
Morteza Pourreza Shahri, Katrina N. Lyon, Julia Schearer, Indika Kahanda
DeepPPPred combines BERT, CNN, and RNN with PPPred to classify protein-phenotype co-mentions, achieving state-of-the-art performance on an expanded gold-standard dataset.
Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist…·Enrico Lavezzo
The paper reports results from the CAFA3 challenge, showing improved computational protein function prediction and new annotations for over 1000 genes through experimental screens in C. albicans, P. aureginosa, and Drosophila.
Morteza Pourreza Shahri, Mandi M. Roe, Gillian L. Reynolds, Indika Kahanda
PPPred classifies protein-phenotype co-mentions from biomedical text using supervised learning, outperforming baselines in validation.