Author

Irena Fischer-Hwang

Stanford UniversityORCID 0000-0002-4558-4068Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:clustering· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:graph neural network· 1 Organism:human· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Tsachy WeissmaniD· 3 shared James ZouiD· 2 shared Zhipeng LuiD· 2 shared Idoia OchoaiD· 1 shared Jian‐Fu CheniD· 1 shared Jianhui Bai· 1 shared Kongpan Li· 1 shared Mikel HernáeziD· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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3 shared papersBioinformatics

Tsachy WeissmanORCID

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3 papers

Recent·Most cited

BioinformaticsGenome ResearchPeer-reviewedMar 24, 2022

Classification and clustering of RNA crosslink-ligation data reveal complex structures and homodimers

Minjie Zhang, Irena Fischer-Hwang, Kongpan Li…·Zhipeng Lu

The paper introduces computational tools to analyze crosslink-ligation RNA data, revealing new RNA structures and homodimers.

25 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

BioinformaticsScientific ReportsPeer-reviewedOct 21, 2019

Denoising of Aligned Genomic Data

Irena Fischer-Hwang, Idoia Ochoa, Tsachy Weissman, Mikel Hernáez

The paper introduces SAMDUDE, a denoising method for aligned genomic data that improves variant calling by reducing false positives and increasing true variant detection in both chromosome and whole genome sequencing data.

12 citations

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintJun 12, 2019

Cross-linked RNA Secondary Structure Analysis using Network Techniques

Irena Fischer-Hwang, Zhipeng Lu, James Zou, Tsachy Weissman

The paper develops an automated method for RNA secondary structure analysis using network techniques, validated against manual analysis and known structures.

3 citations

long-read sequencingstatistical model

𝕏 PostBluesky