Qi Xu

This paper introduces two novel markers, nbTMB and mlTNB, to improve prediction of treatment response and outcomes in cancer by incorporating non-B DNA mutation information.

The paper introduces TTSBBC, a platform for analyzing and visualizing TFO target site sequences to aid in designing and validating TTSs.

The paper introduces methods to identify molecular alterations that frequently co-occur across cancer models, aiming to discover cancer maintenance markers and inform translational study design.

MoCoLo tests motif co-localization by analyzing reciprocal co-occurrence and accounting for confounders, confirming histone marker co-occurrence and oxidative DNA damage localization.