Corinne Cruaud

This study examines the evolutionary dynamics of two symbiotic bacteria in aphids, showing they evolve together with similar rates and undergo functional specialization.

This study examines population diversity and structure of four MAST-4 species using metagenomics and single-cell genomics, revealing temperature and salinity as key drivers of population divergence.

This study presents genomic analyses of Diutina catenulata, revealing genetic structuring, drug resistance homologs, and a novel DNA transposon family associated with chromosomal instability.

The paper generates a chromosome-scale genome assembly for an Australian finger lime and uses resequencing to catalog genetic diversity in Oceanian citrus, revealing population structure and hybridization patterns.

The paper uses the enterosignature model to stratify gut microbiome variation and links functional metabolic patterns to host health outcomes across multiple cohorts.

The paper investigates sRNA precursors at the Arabidopsis self-incompatibility locus, showing they repress recessive alleles through non-canonical pathways and generate diverse sRNA molecules.

The paper constructs a citrus super-pangenome from four ancestral species, revealing evolutionary patterns and genetic diversity through gene annotation, resequencing, and PAV analysis.

The paper analyzes microbial diversity in French PDO cheeses using metagenomics and culturomics, identifying new species and functional clusters that may influence cheese flavor.

The paper presents the chromosome-level genome assembly of Androsace saussurei, a plant adapted to extreme alpine environments.

The paper investigates whether dosage compensation and meiotic sex chromosome inactivation persist in parthenogenetic stick insects with relaxed selection, finding both mechanisms are conserved despite the absence of male selection.

This study investigates the evolutionary history and functional specialization of miRNA genes in Arabidopsis halleri and A. lyrata, showing rapid birth-and-death dynamics and integration into core biological processes.

The paper identifies 13 genes in Brassica rapa that regulate microbiota diversity across fungal and bacterial communities, supporting the hologenome theory of evolution.

This study examines dosage compensation and meiotic sex chromosome inactivation in stick insects, finding that X chromosome expression is dynamically regulated in male tissues during development.

The paper presents the chromosome-level genome assembly of Arca noae, a Mediterranean bivalve, providing evolutionary insights and genomic resources for studying environmental adaptation.

The paper demonstrates Nanopore Adaptive Sampling (NAS) for enriching and reconstructing resistance genes in melon genomes, showing fourfold enrichment and accurate assembly across subspecies.

This study sequences the giant Y chromosome of Silene latifolia and reveals its structure, function, and evolutionary history.

The paper presents the genome of Pinctada radiata, a Lessepsian migrant, providing insights into its genetic adaptations to environmental changes and supporting conservation efforts.

The paper analyzes centromere structure and function in stick insects, revealing a functionally monocentric system with holocentric-like features and chromosome-specific centromeres.

This study analyzes 60 brown algal genomes to identify genomic innovations and evolutionary patterns that enabled their adaptation to coastal ecosystems.

The paper describes the European Reference Genome Atlas (ERGA) pilot project, which tests a decentralized model for producing high-quality reference genomes across 98 European species.

This study analyzes discordant phylogenomic data from aphids to resolve their evolutionary history, finding monophyly of subfamilies but unresolved relationships between them.

The paper presents genome sequences of four Ixodes species, revealing gene family amplifications and evolutionary patterns in ticks.

The paper discovers SNPs in a pea germplasm collection using exome capture and resequencing to support genome-wide association studies.

The paper shows that dual symbioses have evolved at least six times in aphids, with secondary co-obligate symbionts typically evolving from facultative taxa and varying in nutrient contributions.

The paper reports the chromosome-scale genome of Pelagomonas calceolata, revealing adaptations to iron-poor environments and its potential expansion under climate change.

The paper reports higher gene counts in two coral genomes due to tandem duplications, suggesting a role in immune system and disease resistance.

This paper evaluates Oxford Nanopore and Bionano Genomics technologies for detecting structural variations in Arabidopsis thaliana, finding that ONT provides more specific SVs while Bionano better characterizes large SVs.

This paper presents a high-quality chromosome-scale genome assembly of bread wheat using long-read sequencing, enhancing research and breeding applications.

This paper reports a telomere-to-telomere chromosome-scale assembly of the banana genome using Oxford Nanopore long-read sequencing.

The paper presents a new long-read assembly of the Brassica napus Darmor-bzh genome using nanopore sequencing, optical and genetic maps, resulting in a highly contiguous and complete reference genome.