Author

Christian Atallah

European Bioinformatics InstituteORCID 0000-0002-4853-4189Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Assay:protein sequence· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Anil WipatiD· 1 shared James SkeltoniD· 1 shared Lorna RichardsoniD· 1 shared Martín BeracocheaiD· 1 shared Robert D. FinniD· 1 shared Simon J. CharnockiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

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6 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Anil WipatORCID

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2 papers

Recent·Most cited

BioinformaticsGigaSciencePeer-reviewedJan 1, 2026

PIMENTO: A PrIMEr infereNce TOolkit to facilitate large-scale calling of amplicon sequence variants

Christian Atallah, Lorna Richardson, Martín Beracochea, Robert D. Finn

PIMENTO identifies and removes primer sequences from amplicon sequencing data to enable large-scale variant calling.

DOI 10.1093/gigascience/giag083

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 24, 2019

Functional Analysis of Enzyme Families Using Residue-Residue Coevolution Similarity Networks

Christian Atallah, James Skelton, Simon J. Charnock, Anil Wipat

The paper introduces Coevolution Similarity Networks (CSNs) to analyze enzyme families by clustering based on coevolution patterns, showing higher predictive power for substrate specificity annotation than Sequence Similarity Networks.

2 citations

protein sequencestatistical model

𝕏 PostBluesky