Author

Fatemeh Afrasiabi

University of Massachusetts BostonORCID 0000-0002-5178-0372Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:machine learning (classical)· 2 Assay:protein structure· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:trajectory inference· 1

Frequent Co-Authors

Nurit HaspeliD· 2 shared Ramin DehghanpooriD· 2 shared

Activity by Year

2021-2022 · peak 1/yr

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2 top collaborators · 1 mutual co-author link

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2 shared papersBioinformatics

Nurit HaspelORCID

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2 papers

Recent·Most cited

BioinformaticsEPiC series in computingPeer-reviewedMar 22, 2022

Using Topological Data Analysis and RRT to Investigate Protein Conformational Spaces

Ramin Dehghanpoor, Fatemeh Afrasiabi, Nurit Haspel

This study uses Topological Data Analysis to evaluate RRTMC, a computational method for exploring protein conformational spaces, finding that its intermediates align with experimental data.

3 citations

protein structurestatistical model

𝕏 PostBluesky

BioinformaticsMoleculesPeer-reviewedApr 16, 2021

Integrating Rigidity Analysis into the Exploration of Protein Conformational Pathways using RRT* and MC

Fatemeh Afrasiabi, Ramin Dehghanpoor, Nurit Haspel

This paper integrates rigidity analysis into a hybrid MC-RRT* algorithm to improve the efficiency and accuracy of exploring protein conformational pathways.

4 citations

protein structurestatistical model

𝕏 PostBluesky