Soham Mukhopadhyay

The paper presents the first chromosome-level genome of the blueberry stem gall wasp, revealing repeat-driven genome expansion and insights into symbiont interactions and host adaptation.

The paper uses whole-genome sequencing and RenSeq to analyze NLR gene diversity in clubroot-resistant canola lines and identifies allele-level variation contributing to resistance.

This study shows PbGH3, a clubroot pathogen effector, modulates SA-auxin homeostasis in plants to alter root morphology and promote infection.

The paper uses structural genomics to analyze secretomes of gall-forming microbes, identifying novel effector clusters and their potential roles in pathogenicity.

The paper screens Arabidopsis ecotypes for clubroot resistance, identifies novel resistant lines, and explores genetic mechanisms underlying resistance.

This paper assembles and annotates the mitochondrial genome of Empoasca fabae, revealing its gene composition and phylogenetic placement.

This study refines the NLRome of Brassica napus using RenSeq, increasing annotated NLR genes from 345 to 715 and identifying genomic regions with misannotations.

This paper presents the first telomere-to-telomere genome assembly of Plasmodiophora brassicae, a plant pathogen, and provides a high-quality gene annotation.