Author

Matěj Špeťko

VSB - Technical University of OstravaORCID 0000-0002-5486-0503Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 1 Approach:diffusion model· 1 Research Focus:protein design· 1 Assay:protein sequence· 1 Research Focus:sequence-to-function modeling· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Aakarsh Vermani· 1 shared Ellena Jiang· 1 shared Minji LeeiD· 1 shared Mohammed AlQuraishiiD· 1 shared Sebastiaan De Cooman· 1 shared Yi‐Cheng LiniD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Aakarsh Vermani

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintMay 5, 2026

Fast and Ultra-Capable Protein Design: Advancing the Frontier Through Atomistic SE(3)-Equivariance with Genie 3

Yi‐Cheng Lin, Minji Lee, Aakarsh Vermani…·Mohammed AlQuraishi

This paper introduces Genie 3, a diffusion model that improves protein design by combining SE(3)-equivariance with hallucination, achieving state-of-the-art results in binder design and motif scaffolding.

2 citations

protein sequencediffusion model

𝕏 PostBluesky