Author
Centre National de la Recherche ScientifiqueORCID 0000-0002-5656-4708Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Jean Mainguy, Téo Lemane, Adelme Bazin…·David Vallenet
Precomputed PPanGGOLiN pangenomes for over 4,600 prokaryotic species (Genome Taxonomy Database clusters), with plasticity regions and modules, downloadable via web, API and command line for projection onto new genomes.
Nena Martin, Julie Kleine-Schultjann, Elena París…·Fabien Duveau
The paper identifies trans-acting mutations in yeast that modulate gene expression noise in both intrinsic and extrinsic ways, revealing non-nuclear factors influencing nuclear gene expression.
Adelme Bazin, Claudine Médigue, David Vallenet, Alexandra Calteau
panModule identifies conserved modules in pangenome graphs to understand functional gene organization in microbial genomes.
Adelme Bazin, Guillaume Gautreau, Claudine Médigue…·Alexandra Calteau
panRGP predicts genomic islands and explores their diversity using pangenome graphs across hundreds of genomes.
Guillaume Gautreau, Adelme Bazin, Mathieu Gachet…·David Vallenet
PPanGGOLiN partitions pangenome graphs to classify gene families into persistent, cloud, and shell partitions, revealing insights into genome dynamics and diversity.