Author

Hind Rafei

The University of Texas MD Anderson Cancer CenterORCID 0000-0002-5724-4183Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:large language model· 1 Approach:statistical model· 1

Frequent Co-Authors

Katayoun RezvaniiD· 2 shared Ken CheniD· 2 shared Matthew M. GubiniD· 2 shared Shan HeiD· 2 shared Vakul MohantyiD· 2 shared Weiyi PengiD· 2 shared Yukun TaniD· 2 shared Cara L. HaymakeriD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Katayoun RezvaniORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 19, 2025

Literature-scaled immunological gene set annotation using AI-powered immune cell knowledge graph (ICKG)

Shan He, Yukun Tan, Qing Ye…·Ken Chen

The paper constructs an immune cell knowledge graph (ICKG) using AI to annotate immunological gene sets more accurately than existing methods.

DOI 10.1101/2025.02.19.639172

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsiSciencePeer-reviewedMay 23, 2024

Elucidating immune-related gene transcriptional programs via factorization of large-scale RNA-profiles

Shan He, Matthew M. Gubin, Hind Rafei…·Ken Chen

The paper constructs immune-specific gene sets using non-negative matrix factorization on bulk RNA-seq data to improve immune subtype analysis and ICB response prediction.

1 citation

humanbulk RNA-seq

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