Logan S. Whitehouse

This study introduces TEforest, a machine learning method that improves short-read TE detection and genotyping by leveraging long-read assemblies, achieving better accuracy than traditional methods.

The paper proposes a graph convolutional network to directly learn from tree sequences for population genetic inference, showing comparable or better performance than CNNs on benchmark tasks.

PhyloMatcher resolves taxonomic name conflicts by querying taxonomic databases to find synonyms for target species names.