Peter D. Karp

The paper describes a collaborative curation workshop to improve the metabolic reconstruction of Alteromonas macleodii ATCC 27126 using genomic and physiological data, identifying key metabolic pathways and gaps.

The paper introduces a tool for visualizing up to four omics datasets on organism-scale metabolic network diagrams using interactive web-based charts.

The paper introduces a web-based tool for comparing gene functions across organisms, allowing users to explore similarities and differences in subsystems and biological processes.

The paper introduces an updated genome browser, Genome Explorer, that enables fast and intuitive genome exploration with high information density and synchronized comparative features.

The paper improves operon prediction in microbial genomes by adding new features, increasing accuracy from 79.55% to 83.49%.