Samuel L. Neff

E.PathDash provides a tool for analyzing gene expression data from pathogens, enabling rapid pathway activation analysis and reproducibility assessment across multiple studies.

Rocket-miR predicts human miRNA interactions with pathogens to identify potential antimicrobial candidates against antibiotic-resistant infections.

CF-Seq provides a web tool for re-analyzing CF pathogen RNA-seq data, enabling efficient filtering, visualization, and hypothesis generation across multiple studies.

The paper analyzes transcriptional patterns of core and accessory genes in P. aeruginosa strains using a transcriptome compendium, revealing stable core gene expression patterns across strains.