Author

Ryan K. Spangler

Stanford UniversityORCID 0000-0002-6080-3142Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Research Focus:software / tool· 2 Research Focus:benchmarking· 1 Organism:E. coli· 1 Approach:statistical model· 1

Frequent Co-Authors

Christopher John SkalnikiD· 2 shared Eran AgmoniD· 2 shared Jerry H. MorrisoniD· 2 shared Markus W. CovertiD· 2 shared Shayn M. PeirceiD· 2 shared Lee Talman· 1 shared William PooleiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersSystems Biology

Christopher John SkalnikORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Systems BiologyBioinformaticsPeer-reviewedJan 28, 2022

Vivarium: an interface and engine for integrative multiscale modeling in computational biology

Eran Agmon, Ryan K. Spangler, Christopher John Skalnik…·Markus W. Covert

This paper introduces Vivarium, a software tool for building integrative multiscale models in computational biology, demonstrating its utility by combining multiple modeling frameworks.

45 citations

experimental assaysoftware / tool

𝕏 PostBluesky

Systems BiologybioRxivPreprintApr 27, 2021

Whole-Colony Modeling of Escherichia coli

Christopher John Skalnik, Eran Agmon, Ryan K. Spangler…·Markus W. Covert

The paper develops a whole-colony model of E. coli integrating single-cell mechanisms with population-level interactions, showing that AmpC expression, not AcrAB-TolC, drives antibiotic survival.

5 citations

E. coliexperimental assay

𝕏 PostBluesky