Nadège Guiglielmoni

This paper identifies three new Panagrolaimus species using genome sequencing, ultra-conserved element analysis, and morphology, supported by high-quality assemblies from long-read data.

This study compares the genomes of parasitoid worms Mermithidae and Nematomorpha to identify genetic features linked to their parasitoid lifestyle and host manipulation.

This paper presents a chromosome-level genome assembly of Acrobeloides nanus, revealing genomic features and adaptations related to parthenogenesis and desiccation resistance.

Third nuclear genome for arthropod pinworms (Thelastomatoidea): a PacBio long-read Cranifera cranifera assembly (242 Mb, N50 43 kb, 90.5-94% BUSCO) plus a 24644-base mitogenome and male redescription.

This study compares the genomes of ancient asexual and sexual oribatid mites, finding that asexual species have streamlined genomes with fewer novel genes compared to their sexual relatives.

The paper shows that clitellates experienced a burst of genomic rearrangements leading to loss of macrosynteny with marine annelids and new chromosomal interactions.

The paper presents the first chromosome-level genome assembly of Flaccisagitta enflata, providing a resource for comparative genomic studies in Chaetognatha and Gnathifera.

This study compares the genome of the temperate coral Astrangia poculata with the tropical coral Acropora millepora to identify gene family expansions related to winter quiescence, innate immunity, and sexual reproduction.

The paper presents a high-quality chromosome-level genome assembly for the invasive Caucasian dwarf goby, providing a foundation for studying its adaptive traits.

The paper describes the European Reference Genome Atlas (ERGA) pilot project, which tests a decentralized model for producing high-quality reference genomes across 98 European species.

The paper presents a high-quality genome assembly and annotation of Coccomyxa viridis SAG 216-4 using long-read sequencing and Hi-C, resulting in a complete nuclear, mitochondrial, and plastid genome.

This study evaluates long-read sequencing technologies and assemblers for haplotype-resolved genome assembly in non-model animals, showing that assembler choice, not sequencing technology, determines success.

The paper uses long-read sequencing to generate high-quality, chromosome-scale assemblies of nematode genomes, improving gene and transposable element predictions.

The paper identifies a female-heterogametic ZW sex-determination system in Hermannia gibba, a species of oribatid mite, using genome assembly and allele-frequency analysis.

The paper identifies haplotypic independence as a mechanism enabling long-term survival of an asexual mite species without sex.

The paper presents a high-quality genome assembly for the ant Lasius platythorax using long-read sequencing and Hi-C, providing insights into the genomic basis of trait differentiation in ant species.

The paper presents chromosome-level genome assemblies for two hybridogenetic lineages of Cataglyphis hispanica using long-read sequencing and 3C data, enabling studies of thermal adaptation and reproductive systems.

The paper presents a chromosome-level genome assembly for the European flat oyster, providing insights into its genetics and potential for aquaculture improvement.

The paper evaluates long-read assemblers and post-processing tools for haplotype collapsing in non-model organisms, finding methods that improve haploid assembly quality.

GraphUnzip phases assembly graphs into haplotypes using long reads and Hi-C, producing high-quality, gap-less supercontigs across simulated and real datasets.

The paper presents the first high-quality chromosome-level genome assembly of the invasive slug Arion vulgaris, revealing a massive expansion of transposable elements and insights into its evolutionary history.

Chromosight detects patterns in Hi-C contact maps with greater sensitivity and speed than existing methods, applicable to various genomes.

The paper introduces instaGRAAL, a Hi-C-based scaffolder that improves chromosome-level genome assemblies for brown algae.