David Pellow

The paper introduces new minimizer orders for large k-values using decycling sets, improving efficiency in DNA sequencing analysis.

This paper introduces parameterized syncmer schemes for long-read mapping, showing they reduce unmapped and incorrectly mapped reads compared to existing methods.

The paper introduces a dataset-adaptive minimizer order method to reduce memory usage in k-mer counting with minimal runtime increase.

SCAPP improves plasmid assembly in metagenomes by integrating biological knowledge, outperforming existing tools on simulated and real datasets.

PlasClass improves plasmid sequence classification by outperforming existing tools on shorter sequences in metagenomic assemblies.

The paper improves minimizers and winnowing schemes by analyzing k-mer ordering and introducing universal hitting sets to enhance performance.