Kevin Lamkiewicz

ViralClust reduces large viral sequence datasets by clustering, preserving genetic diversity and reducing computational burden.

This paper reviews RPI prediction tools that do not require high-throughput data and evaluates their performance across species and output types.

The paper identifies conserved RNA secondary structures in HCV genomes through full-genome alignment and analysis, showing conservation in specific regions like core, NS5A, and NS5B.

RIBAP improves pangenome analysis by using ILP to refine gene clusters, outperforming existing tools in identifying core genes across diverse bacterial genomes.

The paper analyzes 61 Chlamydia psittaci genomes to identify genomic features correlated with host tropism and phylogeny.

The paper annotates and analyzes non-coding RNAs in 16 bat genomes, revealing new expression patterns and providing a resource for studying bat biology and host-virus interactions.

This study uses direct RNA nanopore sequencing to analyze full-length coronavirus genomes, identifying structural variants and methylation sites in viral RNAs.

This study identifies potential miRNAs in Herpesvirus family members using a bioinformatic pipeline, finding novel candidates in Epstein-Barr virus and Human Herpesvirus 7.