Author

Shradha Saraf

European Bioinformatics InstituteORCID 0000-0002-6433-8356Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Andrew R. JonesiD· 2 shared Bruno Contreras‐MoreiraiD· 2 shared Guy NaamatiiD· 2 shared Sandeep AmberkariD· 2 shared Sarah C. DyeriD· 2 shared Ana Maria CasasiD· 1 shared Andrew J. OlsoniD· 1 shared Dario CopettiiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersGenomics

Andrew R. JonesORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintFeb 17, 2025

A pan-gene catalogue of Asian cultivated rice

Bruno Contreras‐Moreira, Eshan Sharma, Shradha Saraf…·Andrew R. Jones

The paper develops a pan-gene catalogue for Asian cultivated rice by creating a reference panel of 16 cultivars and identifying core and cultivar-specific genes.

2 citations

plant (other)whole-genome sequencing

𝕏 PostBluesky

GenomicsGenome biologyPeer-reviewedOct 5, 2023

Calling pangenes from plant genome alignments confirms presence-absence variation

Bruno Contreras‐Moreira, Shradha Saraf, Guy Naamati…·Sarah C. Dyer

The paper introduces get_pangenes to identify pangenes from genome alignments, showing it outperforms existing methods and confirms presence-absence variation in barley.

15 citations

plant (other)whole-genome sequencing

𝕏 PostBluesky