Author
Scott Ronquist
University of MichiganORCID 0000-0002-6514-9194Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2017-2022 · peak 2/yrCo-Author Collaboration Network
10 top collaborators · 36 mutual co-author links5 papers
Recent·Most cited
- GenomicsiSciencePeer-reviewed
Functional Organization of the Maternal and Paternal Human 4D Nucleome
Stephen Lindsly, Wenlong Jia, Haiming Chen…·Indika Rajapakse
The paper investigates allele-specific relationships between gene expression and genome structure in human cells using integrated haplotype-resolved data.
- BioinformaticsNucleusPeer-reviewed
4DNvestigator: Time Series Genomic Data Analysis Toolbox
Stephen Lindsly, Can Chen, Sijia Liu…·Indika Rajapakse
The paper introduces 4DNvestigator, a toolbox for analyzing time series Hi-C and RNA-seq data, with methods to quantify network and tensor entropy and detect significant changes over time.
31 citationstop 4% - Cell BiologybioRxivPreprint
Genome Architecture Leads a Bifurcation in Cell Identity
Sijia Liu, Haiming Chen, Scott Ronquist…·Indika Rajapakse
This study shows that MYOD1-mediated reprogramming of human fibroblasts into muscle cells involves a genome architecture bifurcation point preceding transcriptional changes.
- BioinformaticsProceedings of the National Academy of SciencesPeer-reviewed
An Algorithm for Cellular Reprogramming
Scott Ronquist, Geoff Patterson, Lindsey A. Muir…·Indika Rajapakse
The paper introduces a data-guided algorithm for cellular reprogramming using transcription factors, validated on human fibroblasts and showing potential for tissue regeneration and cancer cell reprogramming.
40 citations