Matthew Bashton

The paper identifies and masks artefactual variants in SARS-CoV-2 sequencing data to improve the accuracy of within-host diversity and transmission analysis.

This paper reviews clinical and demographic features of IGH::CEBP-rearranged BCP-ALL cases and introduces new cases to encourage further study of this rare subtype.

The paper reprocesses SARS-CoV-2 genomic data to correct systematic errors in phylogenies using a novel assembly tool, resulting in a cleaner global tree of 4.47 million samples.

The paper identifies chromothripsis-induced amplification of DYRK1A in blast phase MPN as a driver of aggressive disease and a potential therapeutic target.

This paper analyzes SARS-CoV-2 Spike protein evolution, identifying epitopes and predicting immune escape by correlating structural and sequence data with DMS measurements.

This study identifies TRIM7 as an E3-ubiquitin ligase that ubiquitinates SARS-CoV-2 M protein to inhibit apoptosis and viral replication.

OMEinfo retrieves and standardizes geographical metadata for -omics experiments, enabling reproducible and consistent analysis of location-based data.

ProCogGraph maps cognate ligand domain interactions using a graph database, improving annotation specificity through ligand assignments.

The paper isolates and characterizes strains capable of utilizing lignocellulosic waste for lycopene production, showing their potential in synthetic consortia and genetic modification.

This study adjusts for sampling bias in SARS-CoV-2 Ct values and finds that viral variant and age affect within-host viral burdens, with variant effects varying by vaccination status.