Jun Ohnuki

This paper improves AlphaFold3's ability to predict protein conformations by introducing a repulsive bias in its diffusion model, enabling better capture of ligand-induced structural changes.

This study uses AlphaFold and Markov state modeling to analyze the conformational dynamics of Na+-NQR, revealing how redox state and Na+ binding regulate Na+ translocation.

The paper uses accelerated molecular dynamics and AlphaFold2 to identify a missing inward-open conformation of the OxlT transporter protein.