Author

J. Miguel Ortega

Universidade Federal de Minas GeraisORCID 0000-0002-8047-9191Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genomics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:database / resource· 2 Research Focus:gene regulatory network inference· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Assay:protein sequence· 1

Frequent Co-Authors

Tetsu SakamotoiD· 4 shared Élvio Carlos MoreiraiD· 1 shared João Paulo Amaral HaddadiD· 1 shared Jorge Estefano Santana de SouzaiD· 1 shared M. R. V. CosateiD· 1 shared Renata CavalcanteiD· 1 shared Rômulo C. LeiteiD· 1 shared Tiago Antônio de Oliveira MendesiD· 1 shared

Activity by Year

2019-2020 · peak 3/yr

Co-Author Collaboration Network

8 top collaborators · 18 mutual co-author links

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4 shared papersBioinformatics

Tetsu SakamotoORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 24, 2020

TaxOnTree: a tool that generates trees annotated with taxonomic information

Tetsu Sakamoto, J. Miguel Ortega

TaxOnTree annotates phylogenetic trees with taxonomic information, enabling visualization of taxonomic distribution of orthologs and paralogs.

4 citations

protein sequencestatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 28, 2020

Taxallnomy: Closing gaps in the NCBI Taxonomy

Tetsu Sakamoto, J. Miguel Ortega

The paper develops an algorithm to complete the NCBI Taxonomy tree by assigning ranks to missing nodes and creating names for unnamed nodes, enabling more complete taxonomic lineage analysis.

1 citation

statistical modeldatabase / resource

𝕏 PostBluesky

GenomicsbioRxivPreprintMar 29, 2020

Assessing the sex-related genomic composition difference using a K-mer-based approach: a case of study in Arapaima gigas (Pirarucu).

Renata Cavalcante, José Miguel Ortega, Jorge Estefano Santana de Souza, Tetsu Sakamoto

This study uses a k-mer-based approach to identify sex-related genomic differences in Arapaima gigas, finding that certain k-mers from repetitive regions show sex-specific variation.

DOI 10.1101/2020.03.29.014647

Arabidopsiswhole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintSep 18, 2019

A potential genomic recombination site upstream of the rfb locus in Leptospira interrogans is associated with serogroup Serjoe and serovar Hardjo classification

M. R. V. Cosate, Tetsu Sakamoto, Élvio Carlos Moreira…·Tiago Antônio de Oliveira Mendes

1 citation

whole-genome sequencingstatistical model

𝕏 PostBluesky