Teresa M. Coque

The paper develops a rules-based classifier to predict ciprofloxacin resistance in Klebsiella pneumoniae from genotype data and demonstrates its global distribution association with quinolone consumption.

The paper investigates mercury resistance in gut microbiota of children, finding high prevalence of Hg-resistant bacteria and strong taxonomic structuring of resistance genes.

The paper characterizes microbial communities in hospital sinks, showing they are stable, multi-kingdom reservoirs harboring MDROs and shaped by environmental factors.

The study analyzes the gut resistome of the Wayampi, revealing similar antibiotic resistance gene richness to Europeans but higher metal resistance gene diversity, highlighting shared and distinct resistance patterns.

The paper identifies bacteriocin distribution patterns in Enterococcus faecium and Enterococcus lactis genomes using a tailored database and reveals associations with antibiotic resistance and mobile genetic elements.

The paper investigates the long-term dynamics of Serratia marcescens complex in hospital sinks, identifying persistent strains linked to outbreaks and revealing new insights into their ecology and resistance gene acquisition.

This study analyzes the phylogenetic structure and evolution of Klebsiella pneumoniae clonal groups 14 and 15 using genomic data, revealing independent evolutionary trajectories and the role of plasmids and accessory genomes in their diversification.

PATO is a toolkit for pangenome analysis that efficiently handles thousands of genomes, offering fast and accurate methods for core-genome definition, population structure, and gene sharedness networks.

The paper develops a 3D-based method to predict antibiotic resistance determinants in the human intestinal microbiota and identifies resistotypes in a cohort.