Roux-Cil Ferreira

The paper estimates insertion and deletion rates in HIV-1 gp120 variable loops using longitudinal sequences and coalescent models, finding significant variation in rates and effects on glycosylation.

The paper introduces bayroot, a Bayesian method for estimating HIV-1 integration dates using root-to-tip regression, showing improved accuracy over conventional methods.

The paper introduces CoVizu, a tool for rapidly analyzing and visualizing large SARS-CoV-2 genome datasets, producing consensus trees and beadplot visualizations.