Nishat Anjum Bristy

The paper estimates the number of mutations needed to reconstruct clonal lineage trees from large datasets, showing that modest mutation counts suffice for accurate reconstruction.

Sc-TUSV-ext improves clonal lineage reconstruction by integrating SNV, CNA, and SV from single-cell DNA sequencing data, showing better accuracy on synthetic and real data.

This paper introduces TUSV-int, a method that integrates bulk DNA-seq and scRNA-seq to improve deconvolution and phylogenetic inference for cancer clonal structure.

The paper introduces an alignment-free method for phylogenetic distance estimation under a no-strand bias model, showing high accuracy in simulations and real data.