Author

Jugal Kumar Kalita

University of Colorado Colorado SpringsORCID 0000-0002-8765-7018Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Assay:Hi-C· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Dhruba K. BhattacharyyaiD· 1 shared Oluwatosin OluwadareiD· 1 shared Tulika KakatiiD· 1 shared Van Hovenga· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 2 mutual co-author links

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1 shared paperBioinformatics

Dhruba K. BhattacharyyaORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 10, 2025

D-CoMEx: A Unified Approach to Identify Phenotype-specific miRNA Biomarkers Related to Diseases

Tulika Kakati, Dhruba K. Bhattacharyya, Jugal Kumar Kalita

D-CoMEx identifies phenotype-specific miRNA biomarkers linked to Parkinson's disease and Breast Cancer by integrating co-expression networks with differential analysis.

DOI 10.1101/2025.06.10.658948

humanbulk RNA-seq

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BioinformaticsComputational and Structural Biotechnology JournalPeer-reviewedDec 31, 2022

HiC-GNN: A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks

Van Hovenga, Jugal Kumar Kalita, Oluwatosin Oluwadare

This paper introduces HiC-GNN, a graph neural network for 3D chromosome reconstruction from Hi-C data, showing superior accuracy and generalization across resolutions and cell lines.

21 citations

humanHi-C

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