Author

Yining Liu

Columbia UniversityORCID 0000-0002-8779-2906Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Yining Liu4 papers · Case Western Reserve University

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Approach:optimal transport· 2 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Assay:imaging· 1 Approach:machine learning (classical)· 1 Organism:plant (other)· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Andrew J. BlumbergiD· 2 shared Elham AziziiD· 2 shared Lingting ShiiD· 1 shared Valerio GalantiiD· 1 shared Yinuo JiniD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 8 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Andrew J. BlumbergORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 30, 2024

Automated Cell Type Annotation with Reference Cluster Mapping

Valerio Galanti, Lingting Shi, Elham Azizi…·Andrew J. Blumberg

This paper introduces RefCM, a method that improves cell type annotation in scRNA-seq data using optimal transport and integer programming, achieving accurate cross-technology, cross-tissue, and cross-species mappings.

DOI 10.1101/2024.11.30.626130

scRNA-seqoptimal transport

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedDec 15, 2023

CellStitch: 3D Cellular Anisotropic Image Segmentation via Optimal Transport

Yining Liu, Yinuo Jin, Elham Azizi, Andrew J. Blumberg

CellStitch improves 3D cell segmentation in anisotropic images using optimal transport, outperforming existing methods on anisotropic datasets.

15 citations

plant (other)imaging

𝕏 PostBluesky