Ildefonso Cases

This paper introduces FANTASIA, a tool using protein language models to annotate functions for thousands of animal proteomes, uncovering previously unknown functions across species.

The paper shows that transcription elongation control and mRNA stability coordinate to regulate gene expression strategies across the yeast cell cycle.

This study compares protein language models and deep learning methods for decoding functional information from proteomes of model organisms, finding language models more precise and informative.

The paper expands the FLP toolkit in C. elegans by adding new driver lines and a protein degradation system, enabling precise gene inactivation and transcriptomic profiling.

This study shows that human prefoldin affects co-transcriptional pre-mRNA splicing by modulating RNA polymerase II phosphorylation and splicing factor recruitment.