Author

Zhaohui He

Humboldt-Universität zu BerlinORCID 0000-0002-8976-9494Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Organism:Arabidopsis· 2 Approach:experimental assay· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Kerstin KaufmanniD· 2 shared Xinkai ZhouiD· 2 shared Aleš PěnčíkiD· 1 shared Angel BaudoniD· 1 shared Caroline BraeuningiD· 1 shared Cezary SmaczniakiD· 1 shared Dijun CheniD· 1 shared Frederic CarewiD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersPlant Biology

Kerstin KaufmannORCID

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3 papers

Recent·Most cited

Plant BiologybioRxivPreprintOct 4, 2025

Ca2+ signature gates early auxin signaling in Arabidopsis roots

Huifang Song, Angel Baudon, Matthias Freund…·Shouguang Huang

The paper uses optogenetics to show that Ca2+ signals regulate early auxin signaling in Arabidopsis roots, affecting growth and transcriptional responses.

2 citations

Arabidopsisproteomics

𝕏 PostBluesky

Molecular BiologybioRxivPreprintSep 1, 2025

Cellular dynamics and epidermal specialization during Arabidopsis floral development at single-cell resolution

Siye Chen, Manuel Neumann, Zhaohui He…·Kerstin Kaufmann

The paper constructs a single-nucleus transcriptomic atlas of Arabidopsis floral development and identifies key transcription factors regulating epidermal differentiation.

1 citation

Arabidopsisbulk RNA-seq

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BioinformaticsiMetaPeer-reviewedNov 1, 2023

cisDynet: an integrated platform for modeling gene-regulatory dynamics and networks

Tao Zhu, Xinkai Zhou, Yuxin You…·Dijun Chen

cisDynet is a platform for analyzing chromatin accessibility data, integrating preprocessing, downstream analysis, and visualization to uncover gene regulatory networks and GWAS variant associations.

17 citations

mouseATAC-seq

𝕏 PostBluesky