Jörn Kalinowski

The paper shows that tyrosine availability influences Staphylococcus aureus nasal colonization and its interactions with commensal bacteria.

The paper maps sigma54 DNA binding sequences in Pseudomonas putida using a data-driven approach combining DNA libraries, RNA aptamers, and deep sequencing, revealing 64,966 distinct motifs.

This study identifies an unusual glycerol-3-phosphate dehydrogenase in Sulfolobus acidocaldarius involved in glycerol degradation, showing its essential role in growth on glycerol.

This study shows that a single MCP deletion in Shewanella putrefaciens enhances chemotaxis in structured environments with minimal metabolic cost.

The paper shows that adding 5'-UTRs from S. acidocaldarius improves plasmid-based protein production, with the alba 5-UTR increasing yield fourfold.

The paper describes a novel Inovirus phage, Dolos, and its associated rolling circle-replicating plasmid pDolos, which hijacks phage functions to disseminate genetic material.

The paper identifies a novel pentose modification on cytosine in phage DNA that enhances resistance to host restriction systems.

The paper constructs genome-reduced strains of S. lividans to enhance heterologous protein secretion, finding improved secretion levels and altered metabolic and stress responses.

This study shows that ASF1 histone binding is essential for fertility in Sordaria macrospora, but not for genome stability, and identifies a chromosomal duplication linked to the mutant phenotype.

This study uses long-read sequencing to analyze structural variants in mycosis fungoides tumors, revealing complex SVs and chromothripsis events.

This paper introduces a transposase-based protocol for nanopore sequencing of ssDNA without second-strand synthesis, demonstrating its utility for characterizing AAV vectors.

The paper reports genome sequencing and analysis of an Arabidopsis thaliana suspension cell culture line, revealing genome size reduction and differences in sequence variants compared to the reference.