Jean P. Lhorente

This study identifies candidate genes for sea lice resistance in Atlantic salmon and rainbow trout through genome-wide association studies.

The paper discovers and validates 50,000 high-quality SNPs in Nile tilapia through whole-genome resequencing of 326 individuals, useful for genomic selection and trait analysis.

The paper identifies selection signatures in Atlantic salmon populations adapted to different environments using haplotype-based statistics, highlighting candidate genes related to growth traits.

This study analyzes population structure, linkage disequilibrium, and effective population size in three farmed Nile tilapia populations using SNP data from whole-genome sequencing.

The paper uses whole-genome sequencing to fine-map sex determination genes in Nile tilapia, identifying anti-Mullerian hormone as a major gene.

The paper identifies 120 candidate genes associated with resistance to Piscirickettsia salmonis in three salmonid species using GWAS and comparative genomics.

This study identifies genomic regions associated with resistance to IPNV in rainbow trout using GWAS and finds candidate genes related to viral replication and immune response.

This study performs GWAS and evaluates genomic selection for growth and fillet yield in Nile tilapia using imputed SNP panels, finding imputation improves genomic prediction accuracy.

This paper estimates linkage disequilibrium and effective population size in coho salmon using ddRAD markers, suggesting 75,000 SNPs for association studies and an effective population size of 100 ten generations ago.

This study identifies genomic regions and candidate genes associated with resistance to Piscirickettsia salmonis in rainbow trout using a single-step genome-wide association analysis.

This study identifies and characterizes quantitative trait loci (QTL) affecting resistance to sea lice in Atlantic salmon using genomic and transcriptomic data from a commercial breeding population.

The paper analyzes population structure and linkage disequilibrium in Chilean farmed Atlantic salmon using SNP genotypes, finding genetic differentiation and varying LD decay across populations.

This study examines genetic correlations between growth and disease resistance traits in Pacific salmon, finding favorable genetic links between early growth and survival during infection.

The paper identifies a SNP associated with resistance to P. salmonis in coho salmon and shows genomic selection models perform similarly to pedigree-based methods.