Author
University of TartuORCID 0000-0002-9652-8154Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Kaur Robin Kivirüüt, Lauris Kaplinski, Andres Salumets, Tarmo Puurand
DIPLER identifies structurally complex loci using k-mer analysis and de novo assembly from low-coverage sequencing data.
Reidar Andreson, Age Brauer, Lauris Kaplinski…·Maido Remm
This paper develops a k-mer-based method to design PCR primers for rapid, low-cost sequence typing of L. monocytogenes with 100% sensitivity and specificity.
Lauris Kaplinski, Märt Möls, Tarmo Puurand…·Maido Remm
KATK is a tool for variant calling from raw sequencing reads, achieving low false negative and discovery rates while avoiding bias against rare variants.
Tarmo Puurand, Viktorija Kukushkina, Fanny‐Dhelia Pajuste, Maido Remm
AluMine identifies polymorphic Alu element insertions in personal genomes using alignment-free methods, achieving high genotype concordance.
Fanny‐Dhelia Pajuste, Lauris Kaplinski, Märt Möls…·Maido Remm
FastGT calls common SNVs from raw sequencing reads using k-mer frequency analysis, achieving high concordance with reference genotypes.