Author
University of AucklandORCID 0000-0002-9656-3945Unclaimed ORCID profile · follow to get notified of new preprints
Mutual co-authors in cluster
4 papers
Recent·Most cited
Yuda Munarko, Anand Rampadarath, David Phillip Nickerson
CASBERT improves entity retrieval in biosimulation models using BERT embeddings, outperforming bag-of-words methods in precision and recall.
Yuda Munarko, Dewan Mahabub Sarwar, Anand Rampadarath…·David Phillip Nickerson
NLIMED converts natural language queries into SPARQL to discover model entities from biosimulation model repositories.
Woosub Shin, Joseph L. Hellerstein, Yuda Munarko…·John H. Gennari
SBMate evaluates annotation quality in systems biology models using coverage, consistency, and specificity metrics on 1,000 BioModels repository models.
Dewan Mahabub Sarwar, Yuda Munarko, David Phillip Nickerson
The paper introduces a web-based platform for constructing and assembling epithelial transport models using existing models from the Physiome Model Repository.