AlphaGenome identifies a deep intronic variant in a family with PLA2G6-associated neurodegeneration: Closing the diagnostic gap in rare genetic diseases
Sarah J. Eger, Greizy López, Luisa Fernanda Gómez Navarro…·Kenneth S. Kosik
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HudsonAlpha Institute for BiotechnologyORCID 0000-0002-9852-5504Unclaimed ORCID profile · follow to get notified of new preprints
19 papers
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Sarah J. Eger, Greizy López, Luisa Fernanda Gómez Navarro…·Kenneth S. Kosik
Samantha K. Swift, Guangming Huang, J. Nicholas Cochran…·Celeste M M. Karch
The paper identifies NINL as a modulator of tau aggregation through integrative genomic and functional analyses linking it to proteostasis dysfunction in FTD and AD.
Rebecca M. Hauser, Henry L. Limbo, J. Nicholas Brazell…·J. Nicholas Cochran
The paper identifies cis-regulatory elements and genetic variation effects in the MAPT locus using MPRA and CRISPRi in neuronal and HEK293FT cells.
Juliana Acosta‐Uribe, Stefanie Danielle Piña‐Escudero, J. Nicholas Cochran…·Jennifer S. Yokoyama
This study identifies genetic variants associated with Alzheimer's disease and frontotemporal dementia in admixed Latin American populations using whole-genome sequencing and ancestry analysis.
Ashlyn G. Anderson, Brianne B. Rogers, Erin A. Barinaga…·J. Nicholas Cochran
The paper identifies cell type-specific regulatory elements in nine mammals and shows their conservation and association with neuropsychiatric and neurodegenerative disease risks.
Iván Rodríguez-Nunez, Samuel C. Bartley, Jared W. Taylor…·R Myers
The paper introduces a standardized iPSC-derived microglia model to study transcriptional regulatory networks in CNS diseases and identifies disease-associated genetic variants.
Yuliya Voskobiynyk, Zhiyong Li, J. Nicholas Cochran…·Erik D. Roberson
This study generates a conditional tau knockout model and shows that tau reduction in excitatory neurons provides excitoprotective effects, while reduction in inhibitory neurons increases seizure susceptibility, even when induced in adulthood.
Camila de Ávila, Crystal Suazo, Jennifer Nolz…·Diego Mastroeni
The paper finds reduced PIN1 gene expression in female Alzheimer's patients correlates with cognitive decline and neuropathological features, suggesting it as a potential biomarker for AD risk in women.
Henne H. Holstege, Matthijs W. J. de Waal, Niccoló Tesi…·Jennifer S. Yokoyama
The paper identifies high-priority missense variants in SORL1 associated with increased Alzheimer's Disease risk and earlier onset, suggesting clinical counseling considerations for carriers.
Carter Wright, Jared W. Taylor, J. Nicholas Cochran…·Erik D. Roberson
The paper analyzes genomic data from early-onset and atypical dementia patients to show that both rare and common genetic variations contribute to dementia risk.
Brianne B. Rogers, Ashlyn G. Anderson, Shelby N. Lauzon…·J. Nicholas Cochran
The paper identifies cis-regulatory elements (cCREs) controlling MAPT expression and links genetic variation in these elements to Alzheimer's disease risk.
Yuliya Voskobiynyk, Gopal Battu, Stephanie A. Felker…·Gregory S. Barsh
This study identifies a non-coding variant in SCN1A that causes aberrant inclusion of a poison exon, leading to reduced Nav1.1 expression and Dravet syndrome in a mouse model.
Emily C. Graff, J. Nicholas Cochran, Christopher B. Kaelin…·Douglas R. Martin
This study identifies a PEA15 mutation in domestic cats causing lissencephaly and cerebral malformations, revealing a role for PEA15 in gyrencephalic brain development.
Yuliya Voskobiynyk, Jonathan R. Roth, J. Nicholas Cochran…·Erik D. Roberson
This study shows that increased BIN1 expression in neurons leads to hyperexcitability, which is modulated by Tau, suggesting a role for BIN1 in Alzheimer's disease pathogenesis.
J. Nicholas Cochran, Ethan G. Geier, Luke W. Bonham…·Jennifer S. Yokoyama
The paper identifies rare variants in TET2 associated with early-onset Alzheimer's disease and frontotemporal dementia, highlighting both coding and non-coding variants as risk factors.
J. Nicholas Cochran, Emily McKinley, J. Nicholas Cochran…·Erik D. Roberson
Genome sequencing for early-onset dementia identified genetic variants in 50% of patients, including pathogenic variants and moderate penetrance alleles, supporting an oligogenic model.
Travis Rush, Jonathan R. Roth, Samantha J. Thompson…·Erik D. Roberson
The paper develops a peptide inhibitor of Tau-SH3 interactions and shows it reduces Aβ oligomer toxicity in neurons.
Kevin M. Bowling, Michelle L. Thompson, Michelle D. Amaral…·Gregory M. Cooper
This study analyzes genomic data from 371 children with intellectual disability or developmental delay to identify pathogenic variants and assess diagnostic utility.