Bercem Dutagaci

This study uses molecular dynamics simulations to investigate how DSIF affects the dynamics of RNA polymerase II elongation complex, identifying key sites of impact and proposing an allosteric mechanism.

This study uses molecular dynamics simulations to investigate how phosphorylation patterns and salt concentration affect RNA Polymerase II CTD clustering behavior.

This paper presents the structure of ATP-bound RNA Polymerase II at 3.0 Å resolution using a free-electron laser, revealing new insights into substrate binding and metal coordination in the active site.

This study predicts SPI binding sites on Pol II-Spt5 and shows how strong binding affects RNA and DNA dynamics at the exit site.