Author

Sofie Spatharis

University of GlasgowORCID 0000-0003-1030-9821Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:experimental assay· 1 Assay:metagenomics· 1

Frequent Co-Authors

Kim PræbeliD· 2 shared Martin Stephen LlewellyniD· 2 shared Toni Dwyer· 2 shared Anna H. Kintner· 1 shared Annabell Macphee· 1 shared Bachar A. CheaibiD· 1 shared Brendan RobertsoniD· 1 shared Calum Johnstone· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersZoology

Kim PræbelORCID

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2 papers

Recent·Most cited

ZoologyEnvironmental DNAPeer-reviewedSep 1, 2024

High resolution longitudinal molecular and morphological tracking of planktonic threats to salmon aquaculture.

María Algueró‐Muñiz, Sofie Spatharis, Toni Dwyer…·Martin Stephen Llewellyn

The paper identifies planktonic drivers of gill disease and mortality in salmon aquaculture using molecular and morphological methods over a growing season.

3 citations

metagenomicsstatistical model

𝕏 PostBluesky

GeneticsFrontiers in MicrobiologyPeer-reviewedDec 6, 2018

Environmental DNA: a new low-cost monitoring tool for pathogens in salmonid aquaculture.

Lucy Peters, Sofie Spatharis, Maria Augusta Dario…·Kim Præbel

This study evaluates the accuracy and cost-effectiveness of Ion Torrent sequencing for eDNA monitoring in aquaculture, finding it comparable to Illumina for detecting pathogens and microalgae.

85 citationstop 4%

bulk RNA-seqstatistical model

𝕏 PostBluesky