Renee Salz

The paper generates a proteogenomic atlas of the human neural retina using long-read RNA-sequencing and mass spectrometry, identifying novel transcript isoforms and peptides.

The paper uses long-read sequencing and cDNA capture to sequence large transcripts associated with Usher syndrome in the human neural retina, identifying novel isoforms and splicing events.

The paper uses long-read sequencing to profile immune cells stimulated by pathogens, identifying novel transcripts and isoforms that reveal new insights into immune response mechanisms.

SUsPECT improves variant annotation by using custom long-read transcriptomes to better predict variant effects in clinical settings.

The paper compares proteogenomics and open variant search approaches for detecting single amino acid variants in shotgun proteomics data using NA12878 cell line data.