Author

Anne Kakouridis

Lawrence Berkeley National LaboratoryORCID 0000-0003-1627-3444Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:bacteria (other)· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Research Focus:ecology & biodiversity· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Aindrila MukhopadhyayiD· 2 shared Adam M. DeutschbaueriD· 1 shared Alex CodikiD· 1 shared Alexey E. KazakoviD· 1 shared Christina A. FossumiD· 1 shared E. E. NuccioiD· 1 shared Ferran Garcia-Pichel· 1 shared Guilherme Marcelino Viana de SiqueiraiD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersMicrobiology

Aindrila MukhopadhyayORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintJun 8, 2026

Mapping Genome-wide Transcription Factor Binding Sites in two Rhodanobacter strains Isolated from Extreme Environments

Vishalakshi Bhanot, Alexey E. Kazakov, Guilherme Marcelino Viana de Siqueira…·Aindrila Mukhopadhyay

The paper identifies target genes for 31 transcription factors in two Rhodanobacter strains using DAP-seq and comparative genomics, revealing conserved regulatory networks and a key global regulator Clp.

DOI 10.64898/2026.06.06.730518

bacteria (other)ChIP-seq

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MicrobiologyACS Synthetic BiologyPeer-reviewedAug 16, 2024

Desiccated cyanobacteria serve as efficient plasmid DNA carrier in space flight

Anne Kakouridis, Spencer Diamond, Thomas Eng…·Aindrila Mukhopadhyay

The paper demonstrates that desiccated cyanobacteria can safely transport plasmid DNA to and from space without cryogenic storage, preserving DNA integrity for use in synthetic biology.

3 citations

bacteria (other)DNA methylation

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MicrobiologyNew PhytologistPeer-reviewedFeb 15, 2024

Arbuscular mycorrhiza convey significant plant carbon to a diverse hyphosphere microbial food web and mineral-associated organic matter

Anne Kakouridis, Mengting Yuan, E. E. Nuccio…·Mary K. Firestone

This study quantifies how arbuscular mycorrhizal fungi transfer plant carbon to soil microbial communities and mineral-associated organic matter.

122 citationstop 1%

multiple speciesmetagenomics

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