Melike Berksöz

The paper introduces a method to identify key residues driving conformational changes in proteins using multiple perturbations, with applications in biosensor design.

The paper uses molecular dynamics simulations to evaluate and rank the performance of single fluorescent protein-based calcium biosensors based on water distribution and hydrogen bond changes.

The paper uses molecular dynamics simulations to analyze hydrogen bond dynamics in a maltose biosensor, identifying key factors distinguishing its bright and dark states.