Alexandre Antonelli

This paper develops a scalable method to prioritize areas for plant occurrence data collection, validated by experts and adaptable to national priorities.

This study constructs a comprehensive phylogenomic framework for Vanilla, revealing evolutionary relationships, historical biogeography, and hybridization patterns.

The paper investigates how antipredator traits in skipper butterflies evolve in response to environmental variation, finding convergent evolution and rapid diversification of wing shape and color.

This paper uses multi-agent reinforcement learning to simulate animal behavior in alpine ecosystems and assesses ecosystem resilience under various stress scenarios.

The paper synthesizes passive acoustic monitoring data across ecosystems to assess global coverage and identify gaps in biodiversity monitoring.

The paper develops an AI model to predict successful genomic DNA sequencing from herbarium specimens using morphological, metadata, and DNA quantity features.

This paper uses AI to optimize ecological restoration by balancing biodiversity and carbon sequestration goals, showing that prioritizing biodiversity can enhance conservation while slightly reducing carbon gains.

The paper identifies global plant diversity darkspots with limited species data and prioritizes regions for collection efforts based on environmental and socio-economic scenarios.

This study uses morphometrics and phylogenomics to analyze coca species and their relatives, revealing gene flow and taxonomic implications for coca classification.

This study reconstructs the phylogeny of orchids using genomic data and infers their geographic origin and speciation patterns, finding their origin in Laurasia and recent speciation in Central America.

The paper presents the first highly contiguous nuclear and organelle genome assemblies for C. pubescens, enabling research on alkaloid biosynthesis and evolutionary relationships within the Rubiaceae family.

The paper compares two high-throughput sequencing methods for genotyping degraded Cinchona barks and finds that a target capture kit provides more comprehensive data than genome skimming.

raxmlGUI 2.0 provides a graphical interface for RAxML, enabling phylogenetic analyses with improved automation and support for new RAxML versions.

SpeciesGeoCoder categorizes species occurrences into user-defined areas for biodiversity and evolutionary analyses, enabling fast and flexible data processing.